BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB019G05LP1|AL427522
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1469 1254 0.0
>3x_Contig1469
Length = 9240
Score = 1254 bits (630), Expect = 0.0
Identities = 645/652 (98%), Gaps = 1/652 (0%)
Strand = Plus / Minus
Query: 238 tacatagtccttgtgcttttccaagaacccaaacttgcttctctcttgaacttgcgaccg 297
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 9240 tacatagtccttgtgctttcccaagaacccaaacttgcttctctcttgaacttgcgaccg 9181
Query: 298 ctcacggtgctgtttcttctgcacagagts-tgcaggttacccattgttgtgttgttcgc 356
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9180 ctcacggtgctgtttcttctgcacagagtgctgcaggttacccattgttgtgttgttcgc 9121
Query: 357 gttctggttctactcgagctgtgtctctgttgaagaattaagaccccgttgatagtctat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9120 gttctggttctactcgagctgtgtctctgttgaagaattaagaccccgttgatagtctat 9061
Query: 417 tcagctcttcgaacgtcatgtgtcaaacctatctcatctcatctcatcgctttaaagttt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9060 tcagctcttcgaacgtcatgtgtcaaacctatctcatctcatctcatcgctttaaagttt 9001
Query: 477 tcactttcgtttctttcactatgtacgtgtgcgggtaacgctcgatagattcccaaaact 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9000 tcactttcgtttctttcactatgtacgtgtgcgggtaacgctcgatagattcccaaaact 8941
Query: 537 cacaatatatcatcaccgtcatctcgacacacttggcaatacttgatatacctgttatta 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8940 cacaatatatcatcaccgtcatctcgacacacttggcaatacttgatatacctgttatta 8881
Query: 597 gccagttgtttcccttcgggacccaagctcgacgttcaccatgtctcttgtgtccatttc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8880 gccagttgtttcccttcgggacccaagctcgacgttcaccatgtctcttgtgtccatttc 8821
Query: 657 ggagggagttcgtgcaggtttggtgctgaaaagacatgtggtttgtttcactggaacttm 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8820 ggagggagttcgtgcaggtttggtgctgaaaagacatgtggtttgtttcactggaacttc 8761
Query: 717 taatgatmaaggtttaaagtccatatccgatctgctatctcacatggataaccctgccgt 776
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8760 taatgatcaaggtttaaagtccatatccgatctgctatctcacatggataaccctgccgt 8701
Query: 777 accgtccccacaatcatgcagtattgatagcttamcggatactgaaacgcagaatggcat 836
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 8700 accgtccccacaatcatgcagtattgatagcttaccggatactgaaacgcagaatggcat 8641
Query: 837 ttcatgttatctagtamcgtatagtggtactgctgaaatcgattatgagttg 888
|||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 8640 ttcatgttatctagtaccgtatagtggtactgctgaaatcgattatgagttg 8589
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6310
Number of Sequences: 1807
Number of extensions: 6310
Number of successful extensions: 337
Number of sequences better than 1.0e-20: 1
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)